AWS HealthOmics resources
Documentation
-
User Guide
Learn how to use AWS HealthOmics in this step-by-step developer guide.
-
API Reference
Read this reference guide for AWS HealthOmics APIs and parameters.
Tutorials
-
HealthOmics End-to-End Workshop
Get started with HealthOmics workflows and storage
-
HealthOmics Tutorials
Open source repository on GitHub with example code that demonstrates how to store, process, and query genomic and biological datasets using AWS HealthOmics
Tools
Workflow Tools
Drug Discovery Workflows
Use this collection of AWS HealthOmics workflows to accelerate drug discovery
Example Workflows
Build private workflows based on open source HealthOmics workflow examples
Run Analyzer
Run analyzer is a run performance optimization tool that retrieves run manifests logs from CloudWatch and generates statistics for a run, including CPU and memory utilization for each workflow task
WDL Linter
Use the HealthOmics WDL linter to detect common workflow errors before running workflows
ECR Helper
Migrate existing containers to your private ECR repository using the ECR helper tool
Data Storage Tools
Read Set Transfer Manager
Easily download files from a AWS HealthOmics reference or read set
Event Driven Importer
CDK app demonstrating an event-driven architecture that automates importing data into AWS HealthOmics sequence stores when objects are created in Amazon S3.
Sequence Store Manifest Generator
Generates a json manifest for AWS HealthOmics sequence store import jobs
Sequence Store Duplicate Read Set Finder
Identifies duplicate read sets stored in AWS HelathOmics sequence stores
Solutions
-
Guidance for Migration & Storage of Sequence Data with AWS HealthOmics
This Guidance demonstrates how to import omics sequence data from Amazon Simple Storage Service (Amazon S3) into AWS HealthOmics Storage.
-
Guidance for Multi-Modal Data Analysis with AWS Health and ML Services
This Guidance demonstrates how to set up an end-to-end framework to analyze multimodal healthcare and life sciences (HCLS) data.
-
Guidance for Bioinformatics Workflows on AWS
This Guidance shows how you can build and run production-grade bioinformatics workflows at scale and use AWS services for automation, workflow analysis, storage, and operational and cost observability.
-
Guidance for Bioinformatics Workflow Development Using DevOps on AWS
This Guidance demonstrates how to set up a continuous integration and continuous delivery (CI/CD) pipeline to automate the lifecycle of your bioinformatics workflows on AWS HealthOmics.
What's New
AWS HealthOmics now supports DSL and Nextflow version detection
08/13/24
AWS HealthOmics now supports dynamic run storage for private workflows
04/30/24
AWS HealthOmics now supports cross-account sharing for private workflows
04/30/24
AWS HealthOmics announces support for reading sequence stores through Amazon S3 APIs
04/15/24
AWS HealthOmics now provides additional information for workflow runs
02/23/24
AWS HealthOmics now supports Ultima Genomics DeepVariant Ready2Run workflow
02/05/24
AWS HealthOmics sequence store now includes auto-calculated ETags for read sets
10/06/23
AWS HealthOmics is now available in Israel (Tel Aviv) Region
09/26/23
AWS HealthOmics now provides workflow run archiving and retention
08/30/23
AWS HealthOmics now supports versioning of annotation stores
08/15/23
AWS HealthOmics supports cross-account sharing of omics analytics stores
08/15/23
Blog posts
Revolutionizing Generative Biology with AWS and EvolutionaryScale
06/25/2024
How Takeda Pharmaceuticals Accelerates Large-Scale Bioinformatics with AWS HealthOmics
06/19/2024
Unlock Powerful Genomic Insights with AWS HealthOmics Analytics and Amazon EMR
05/30/2024
Orchestrating Multiple AWS HealthOmics Workflows at Scale
05/07/24
Democratize Omics Data Analysis with Basepair on AWS HealthOmics
04/29/2024
Store omics data cost effectively at any scale with AWS HealthOmics
01/24/24
fMRI Data Preprocessing on AWS using AFNI and AWS HealthOmics
01/08/24
New Tools to Accelerate Workflow Migrations to AWS HealthOmics
12/13/23
Multimodal Data Analysis with AWS Health and Machine Learning Services
10/16/23
Secure Your Genomic Workflows and Data with AWS HealthOmics
10/09/23
Videos
Overcoming the Scientific and IT Challenges Associated with Scaling Omics Analysis (22:11)
Revolutionizing precision medicine: Sonrai uses AWS for drug discovery (3:03)
AWS re:Invent 2023 - Omics innovation with AWS HealthOmics: Amgen’s path to faster results
AWS re:Invent 2023 - Building a precision medicine platform using AWS HealthOmics
AWS HealthOmics End to End Workshop - Presentation (43:27)
AWS On Air ft. AWS HealthOmics & Open Data (20:07)
Using AWS HealthOmics for Genomics End-to-End (2:03:06)
AWS On Air ft. Ready2Run Workflows on AWS HealthOmics (26:34)